How to cite the R package shazam

shazam is a popular R package that is available at https://cran.r-project.org/web/packages/shazam/index.html. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the shazam package have suggested.

Example of an in-text citation

Analysis of the data was done using the shazam package (v1.0.2; Gupta et al., 2015).

Reference list entry

Gupta, N. T., Vander Heiden, J. A., Uduman, M., Gadala-Maria, D., Yaari, G., & Kleinstein, S. H. (2015). Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1. Bioinformatics, 31(20), 3356–3358.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the shazam package v1.0.2 (1).

Reference list entry

1.
Gupta NT, Vander Heiden JA, Uduman M, Gadala-Maria D, Yaari G, Kleinstein SH. Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1. Bioinformatics. 2015 Oct 15;31(20):3356–8.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Gupta2015-eq,
  title     = "{Change-O}: a toolkit for analyzing large-scale {B} cell
               immunoglobulin repertoire sequencing data: Table 1",
  author    = "Gupta, Namita T and Vander Heiden, Jason A and Uduman, Mohamed
               and Gadala-Maria, Daniel and Yaari, Gur and Kleinstein, Steven H",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  31,
  number    =  20,
  pages     = "3356--3358",
  month     =  oct,
  year      =  2015,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btv359",
  language  = "en",
  issn      = "1367-4803, 1460-2059",
  doi       = "10.1093/bioinformatics/btv359"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Gupta, Namita T
AU  - Vander Heiden, Jason A
AU  - Uduman, Mohamed
AU  - Gadala-Maria, Daniel
AU  - Yaari, Gur
AU  - Kleinstein, Steven H
TI  - Change-O: a toolkit for analyzing large-scale B cell immunoglobulin
      repertoire sequencing data: Table 1
T2  - Bioinformatics
VL  - 31
IS  - 20
SP  - 3356-3358
PY  - 2015
DA  - 2015/10/15
PB  - Oxford University Press (OUP)
SN  - 1367-4803
DO  - 10.1093/bioinformatics/btv359
UR  - http://dx.doi.org/10.1093/bioinformatics/btv359
ER  -

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shazam R package release history

Version	Release date
1.0.1	2020-07-19
1.0.0	2020-05-11
0.2.3	2020-02-06
0.2.2	2019-12-16
0.2.1	2019-07-20
0.2.0	2019-07-19
0.1.11	2019-01-28
0.1.10	2018-09-20
0.1.9	2018-04-01
0.1.8	2017-06-30
0.1.7	2017-05-14
0.1.6	2017-05-13
0.1.5	2017-03-24
0.1.4	2016-08-06
0.1.3	2016-07-31
0.1.2	2016-02-21